“Data management has become an increasingly discussed topic among the academic community. Managing data is an element of open science, which has proven to increase dissemination of research and citations for journal articles. Open science increases public access to academic articles, mostly through preprint repositories. Indeed, according to this study, open access (OA) articles are associated with a 36-172% increase in citations compared to non-OA articles. Publishers such as Elsevier have acquired preprint repositories to increase the dissemination of academic research.”
“The office suite for reproducible research
The calls for research to be transparent and reproducible have never been louder. But today’s tools for reproducible research can be intimidating – especially if you’re not a coder. We’re building software for reproducible research with the intuitive, visual interfaces that you and your colleagues are used to….”
Understanding Open Science: Definitions and framework
- 1. Understanding Open Science: Definitions and framework Dr. Nancy Pontika Open Access Aggregation Officer CORE Twitter: @nancypontika
- 2. What is Open Science
- 3. Research Lifecycle: as simple as it gets Idea Methodology Data Collection Analysis Publish
- 4. Idea Methodology Data Collection Analysis Publish Journal article, Dissertation, Book, Source Code, etc. Experiments, Interviews, Observations, etc. Numbers, Code, Text, Images, sound records, etc. Statistics, processes, analysis, documentation, etc. Research Lifecycle: focus on the steps”
“How do you encourage researchers to share the data underlying their publications? The journal Psychological Science introduced a digital badge system in 2014 to signify when authors make the data and related materials accompanying their articles openly available. Criteria to earn the Open Data badge include (1) sharing data via a publicly accessible repository with a persistent identifier, such as a DOI, (2) assigning an open license, such as CC-BY or CC0, allowing reuse and credit to the data producer, and (3) providing enough documentation that another researcher could reproduce the reported results (Badges to Acknowledge Open Practices project on the Open Science Framework)….”
“Addgene is a global, nonprofit repository that was created to help scientists share plasmids. Plasmids are DNA-based research reagents commonly used in the life sciences. When scientists publish research papers, they deposit their associated plasmids at Addgene. Then, when other scientists read the publication, they have easy access to the plasmids needed to conduct future experiments. Before Addgene, scientists were tasked with repeatedly shipping plasmids to each new requesting scientist. Now, scientists ship their plasmids to Addgene once, and we take care of the quality control, MTA compliance, shipping, and record-keeping.
For scientists looking to use plasmids, Addgene provides a searchable database of high-quality plasmids, pooled libraries, and plasmid kits, available at affordable prices. All plasmids in Addgene’s repository are sequenced for quality control purposes and tracked with barcodes from the time they arrive at our facility until they are packed for shipment. Scientists can request plasmids through Addgene’s online ordering system. As of 2016, Addgene also provides ready-to-use AAV and lentivirus preparations of commonly requested plasmids as a service to scientists….”
“At rOpenSci we are creating packages that allow access to data repositories through the R statistical programming environment that is already a familiar part of the workflow of many scientists. Our tools not only facilitate drawing data into an environment where it can readily be manipulated, but also one in which those analyses and methods can be easily shared, replicated, and extended by other researchers….We develop open source R packages that provide programmatic access to a variety of scientific data, full-text of journal articles, and repositories that provide real-time metrics of scholarly impact. …Use our packages to acquire data (both your own and from various data sources), analyze it, add in your narrative, and generate a final publication in any one of widely used formats such as Word, PDF, or LaTeX. Combine our tools with the rich ecosystem of existing R packages….”
“In the continuing quest to make my PhD research comply with the ideals of open science, I’m uploading my protocols to protocols.io. This will create a detailed, publicly available, citable methods record (with a DOI!) for my research which aids with transparency, peer review, replication and re-use.”
“Wednesday, Oct 18, 2017 – 9:00am to 12:00pm
There are many actions researchers can take to increase the openness and reproducibility of their work. Please join us for a workshop, hosted by the Center for Open Science, to learn easy, practical steps researchers can take to increase the reproducibility of their work. The workshop will be hands-on. Using example studies, attendees will actively participate in creating a reproducible project from start to finish.
- Project documentation
- Version control
- Pre-Analysis plans
- Open source tools like the Center for Open Science’s Open Science Framework to easily implement these concepts in a scientific workflow.”
“Please join us for a workshop, hosted by the Center for Open Science and JHU Data Management Services, to learn easy, practical steps researchers can take to increase the reproducibility of their work.
The workshop will be hands-on. (Please bring a laptop if possible.) Using an example study, attendees will actively participate in creating a reproducible project from start to finish.
Topics covered include:
- Project documentation
- Version control
- Pre-analysis plans
- Open source tools: in this specific instance, the Open Science Framework to easily implement these concepts in one easily accessible space”
“In tumultuous times, it is easy to miss the fact that science is undergoing a quiet revolution. For several years now, concerns have been peaking in biomedicine about the reliability of published research – that the results of too many studies cannot be reproduced when the methods are repeated. Alongside growing discontent, the scientific community has answered by driving forward a raft of open science reforms. From initiatives to making research data publicly available, to ensuring that all published research can be read by the public, the aim of these reforms is simple: to make science more credible and accessible, for the benefit of other scientists and the public who fund scientific research.”