Automatically Determining Versions of Scholarly Articles | Rothchild | Scholarly and Research Communication

Abstract:  Background: Repositories of scholarly articles should provide authoritative information about the materials they distribute and should distribute those materials in keeping with pertinent laws. To do so, it is important to have accurate information about the versions of articles in a collection.

Analysis: This article presents a simple statistical model to classify articles as author manuscripts or versions of record, with parameters trained on a collection of articles that have been hand-annotated for version. The algorithm achieves about 94 percent accuracy on average (cross-validated). Conclusion and implications: The average pairwise annotator agreement among a group of experts was 94 percent, showing that the method developed in this article displays performance competitive with human experts.

NMC Horizon Report: 2017 Library Edition

“Six key trends, six significant challenges, and six developments in technology profiled in this report are poised to impact library strategies, operations, and services….These top 10 highlights capture the big picture themes of organizational change that underpin the 18 topics: …[Highlight 3:] In the face of financial constraints, open access is a potential solution. Open resources and publishing models can combat the rising costs of paid journal subscriptions and expand research accessibility. Although this idea is not new, current approaches and implementations have not yet achieved peak efficacy….”

New digital resource to reveal the hidden possibilities for library collections | Jisc

“[M]uch digitisation of special and archival collections has been carried out by academic libraries and heritage organisations with the support of public funding, making content available for everybody to enjoy. However, sustainability of digitisation is still a big problem, especially in the context of providing open access….In creating sustainable digital content, there is a solution that can help bring specialist research to life, one collection at a time; and this is how Reveal Digital have approached the challenge. The support for digitisation of materials through an innovative library crowdfunding model is already underway on the other side of the pond, with collections such as Independent Voices achieving wide popularity and support….Hosted on the Reveal Digital platform, over 100 pledging libraries to date have controlled access until the collection moves to open access (in 2019) following a two-year embargo period, as per its cost recovery-open access model. The platform provides page image-based access with full-text searching, hit-term highlighting, searchable title and issue-level metadata and browsing by series, title and issue….”

Gates, Wellcome Award Nearly $8 Million for Faster TB Diagnosis | News | PND

“The University of Oxford has announced grants totaling nearly $8 million from the Bill & Melinda Gates Foundation, the Wellcome Trust, and others in support of efforts to speed up diagnosis of drug-resistant tuberculosis….The grants will enable Oxford researchers to expand that library [of genomce sequences] by collecting and analyzing a hundred thousand additional samples from around the world….The Oxford team will then assemble the results into a single open-access database….”

Amending Published Articles: Time To Rethink Retractions And Corrections? | bioRxiv

Abstract:  Academic publishing is evolving and our current system of correcting research post-publication is failing, both ideologically and practically. It does not encourage researchers to engage in consistent post-publication changes. Worse yet, post-publication “updates” are misconstrued as punishments or admissions of guilt. We propose a different model that publishers of research can apply to the content they publish, ensuring that any post-publication amendments are seamless, transparent and propagated to all the countless places online where descriptions of research appear. At the center, the neutral term “amendment” describes all forms of post-publication change to an article. We lay out a straightforward and consistent process that applies to each of the three types of amendments: insubstantial, substantial, and complete. This proposed system supports the dynamic nature of the research process itself as researchers continue to refine or extend the work, removing the emotive climate particularly associated with retractions and corrections to published work. It allows researchers to cite and share the correct versions of articles with certainty, and for decision makers to have access to the most up to date information.

Open access campaigners toughen stance towards publishers | THE News

“Open access advocates want universities to be prepared to “pull the plug” on their subscription deals with big publishers, in a sign of an escalation in tactics to open up more research.

As the German academy remains locked in a dispute with Dutch publishing giant Elsevier, those campaigning for open access struck a combative tone at a conference in Berlin, which also heard frustrations that the move away from closed journals was not proceeding fast enough.

Gerard Meijer, director of the Fritz Haber Institute in Berlin, who led Dutch universities in their protracted negotiations with Elsevier in 2015, told delegates that in order not to be “held hostage” by publishers during talks, “complete opting-out of the contracts had to be a realistic option. And we are prepared for that.”

The aim was to give publishers two options: “either to go along in the transformation [to open access] or to face cancellation of the contract”, he told delegates at OA2020 on 22 March.

Rationale for Requiring Immediate Deposit Upon Acceptance – Open Access Archivangelism

There are multiple reasons for depositing the AAM (Author Accepted Manuscript) immediately upon acceptance:

1. The date of acceptance is known. The date of publication is not. It is often long after acceptance, and often does not even correspond to the calendar date of the journal. 2. It is when research is refereed and accepted that it should be accessible to all potential users.  3. The delay between the date of acceptance and the date of publication can be anywhere from six months to a year or more. 3. Publishers are already trying to embargo OA for a year from date of publication. The gratuitous delay from acceptance could double that. 4. The date of acceptance is the natural date-stamp for deposit and the natural point in the author’s work-flow for deposit. 5. The AAV at date of acceptance is the version with the least publisher restrictions on it: Many publishers endorse making the AAM OA immediately, but not the PV (Publisher’s Version). 6. Having deposited the AAM, the author can update it if and when they wish, to incorporate any copy-editing and corrections (including the PV). 7. If the author elects to embargo the deposit, the copy-request button is available to authorize the immediate automatic sending of individual copies on request. Authors can make the deposit OA when they choose. (They can also decline to send the AAM till the copy-edited version has been deposited — but most authors will not want to delay compliance with copy requests: refereed AAMs that have not yet been copy-edited can be clearly marked as such.) 8. The acceptance letter provides the means of verifying timely compliance with the deposit mandate. It is the key to making the immediate-deposit policy timely, verifiable and effective. And it is the simplest and most natural way to integrate deposit into the author’s year-long workflow. 9. The above timing and compliance considerations apply to all refereed research, including research published in Gold OA journals. 10. Of the 853 OA policies registered in ROARMAP 96 of the 515 OA policies that require (rather than just request or recommend) deposit have adopted the immediate-deposit upon acceptance requirement

Below are references to some articles that have spelled out the rationale and advantages of the immediate-deposit requirement.

Stevan Vincent-Lamarre, Philippe, Boivin, Jade, Gargouri, Yassine, Larivière, Vincent and Harnad, Stevan (2016) Estimating Open Access Mandate Effectiveness: The MELIBEA ScoreJournal of the Association for Information Science and Technology (JASIST) 67(11) 2815-2828  Swan, Alma; Gargouri, Yassine; Hunt, Megan; & Harnad, Stevan (2015) Open Access Policy: Numbers, Analysis, EffectivenessPasteur4OA Workpackage 3 Report. Harnad, Stevan (2015) Open Access: What, Where, When, How and Why. In: Ethics, Science, Technology, and Engineering: An International Resourceeds. J. Britt Holbrook & Carl Mitcham, (2nd edition of Encyclopedia of Science, Technology, and Ethics, Farmington Hills MI: MacMillan Reference)   Harnad, Stevan (2015) Optimizing Open Access PolicyThe Serials Librarian, 69(2), 133-141   Sale, A., Couture, M., Rodrigues, E., Carr, L. and Harnad, S. (2014) Open Access Mandates and the “Fair Dealing” Button. In: Dynamic Fair Dealing: Creating Canadian Culture Online (Rosemary J. Coombe & Darren Wershler, Eds.)

ATG Newschannel Original: The Passing of a Giant: Eugene Garfield Dies at 90 | Against The Grain

“The citation indexes and the Current Contents service became essential tools, not only in libraries but in research labs and technology companies across the globe….By having ready access to the tables of contents of core research journals available, researchers were easily able to mark those articles of key interest and then contact the authors for a copy of the article. Perhaps this can be seen today as a precursor to today’s Open Access movement, allowing for direct communication between researchers and their colleagues as well as potential developers….”

Ebooks, Innovation, and the Rebel Within – The Scholarly Kitchen

“As with all good innovators, Peter [Krautzberger, project lead for MathJax] is frustrated. He feels, for example, that advocates of open science focus heavily on sharing of supposedly neutral data, but are still not able to see beyond the PDF. For him open science should be more about how the Web can facilitate communications….”

DOI-OA-Crawler/README.md at master · atmire/DOI-OA-Crawler · GitHub

“Wiley article page urls can be extended with /epdf. From these EPDF pages, we retrieve the value of the field “‘WOL-Article-Access-State'” in the returned HTML source. Currently, this approach only works for articles hosted on onlinelibrary.wiley.com. However, we are very interested in developing similar approaches for other publishers/vendors….”