“eLife is pleased to announce the first working example of its open-source journal hosting and post-production publishing system, Libero Publisher.
The demo showcases some of the essential components of a journal on Libero Publisher, including a homepage and research articles with author lists and affiliations, figures and references. Additional features are being added weekly, sometimes daily, as the platform evolves quickly to accommodate increasingly complex content types.
Libero Publisher is designed to help publishers deliver beautifully presented content to readers on any device, wherever they are. It is just one component of Libero, a community-driven and open-source platform of services and applications being built to help content providers do more with everything they publish….”
“With increasing mandates and initiatives around open data and software, researchers commonly have to make a choice about where to deposit their non-article outputs. Unfortunately, systems that are built to accommodate these objects work separately and can make the process more difficult. As a result, data, code, figures, and other outputs go to a variety of disconnected places, or improper homes (i.e. code with the wrong license or data not curated). To tackle this issue, and make open research best practices more seamless for researchers, we are thrilled to announce a partnership between Dryad and Zenodo….
To jumpstart this collaboration, we are proud to have been awarded an Alfred P. Sloan Foundation grant that will enable us to co-develop new solutions focused on supporting researcher and publisher workflows as well as best practices in data and software curation. By focusing on integrations between our systems, leveraging data and software expertise, we can both extend the reach of our services and open up more opportunities for broader research communities. We are looking forward to re-imagining the submission process for researchers and how we can better support our journal publishing and institutional communities along the way….”
“The Libero community is pleased to present a demonstration of Libero Publisher to exhibit the progress we’ve made so far and to gather feedback as we continue to iteratively develop new features. Being an open-source platform for scholarly publishing, the components of Libero Publisher have always been available for use and downloadable from GitHub. But, if you’re not familiar with cloning code repositories and running software containers, it can be difficult to track the project’s progress due to the lack of visible milestones. This is why we’ve taken the time to showcase some great examples of compatible journal content on a brand new instance of Libero Publisher at https://demo.libero.pub.
We have selected examples from journals of different sizes and disciplines, and will continue to grow the example set as more publishers test their content on the platform or new features are added. You’ll recognise the examples as scholarly articles with titles, authors, keywords, abstracts, content and figures. Other elements will continue to be added, and you can keep track of what to expect next on our public roadmap: https://elifesci.org/roadmap….”
“Editoria’s web-based word processor is being upgraded, along with the rest of the system, in response to the community’s most recentroadmap. In the current version of Editoria, Monemvasia, we have contextually sensitive styles. This means that once a component is recognized as a frontmatter item, for example, the ‘menu’ of style options available automatically updates to display only the styles relevant within the context of a front matter component. The same is true for parts, unnumbered components and chapters.
To take styling in the web-based word processor (via the Wax editor) to the next level, Christos Kokosias, Wax lead developer, is working up functionality (suggested by friends at punctum books) that adds the ability to customize tags at the chapter level. This will help with pagination as it improves the quality of the HTML available to export tools using CSS to automatically typeset content prepared in the browser….”
Scite has released browser plugins for Chrome and Firefox. (This record links to the Chrome version.) “The scite plugin allows you to easily see if a scientific article has been supported or contradicted anywhere you’re reading a scientific article online.”
Abstract: Open, collaborative research is a powerful paradigm that can immensely strengthen the scientific process by integrating broad and diverse expertise. However, traditional research and multi-author writing processes break down at scale. We present new software named Manubot, available at https://manubot.org, to address the challenges of open scholarly writing. Manubot adopts the contribution workflow used by many large-scale open source software projects to enable collaborative authoring of scholarly manuscripts. With Manubot, manuscripts are written in Markdown and stored in a Git repository to precisely track changes over time. By hosting manuscript repositories publicly, such as on GitHub, multiple authors can simultaneously propose and review changes. A cloud service automatically evaluates proposed changes to catch errors. Publication with Manubot is continuous: When a manuscript’s source changes, the rendered outputs are rebuilt and republished to a web page. Manubot automates bibliographic tasks by implementing citation by identifier, where users cite persistent identifiers (e.g. DOIs, PubMed IDs, ISBNs, URLs), whose metadata is then retrieved and converted to a user-specified style. Manubot modernizes publishing to align with the ideals of open science by making it transparent, reproducible, immediate, versioned, collaborative, and free of charge.
Abstract: Repository management relies on knowledge of numerous attributes of academic journals, such as revenue model (subscription, hybrid or fully Open Access), self-archiving policies, licences, contacts for queries and article processing charges (APCs). While datasets collating some of this information are helpful to repository administrators, most cover only one or few of those attributes (e.g., APC price lists from publishers), do not provide APIs or their API responses are not machine readable (self-archiving policies from RoMEO), or are not updated very often (licences and APCs from DOAJ). As a result, most repositories still rely on administrative staff looking up and entering required attributes manually. To solve this problem and increase automation of tasks performed by the Cambridge repository team, I developed Orpheus, a database of academic journals/publishers written in Django. Orpheus was recently integrated with our DSpace repository Apollo and auxiliary systems via its RESTful API, enabling embargo periods to be automatically applied to deposited articles and streamlining the process of advising researchers on payments, licences and compliance to funders’ Open Access policies. Orpheus is Open Source (https://github.com/osc-cam/orpheus) and may be easily expanded or tailored to meet the particular needs of other repositories and Scholarly Communication services.
Abstract: Following from the integration of Cambridge’s Institutional Repository, Apollo, with the University’s CRIS system (Symplectic Elements), Cambridge University Library has developed two web-based systems to further streamline and enhance the workflows for managing Open Access (OA) publication submissions, and to collect key missing publication metadata in ways that improve researchers’ interaction with the relevant systems. The first system, Fasttrack, aims to drastically reduce the time needed to process repository submissions. It provides a user-friendly interface to review and approve submissions in Apollo via the DSpace API. The second web-based application, LastMinute.CAM, is a simple web form to collect missing publications metadata required for calculating open access compliance. Collected publications metadata is automatically pushed into the CRIS’ associated publication records and is then available to the CRIS’ reporting services. We will also present preliminary results from the Jisc Publications Router – Symplectic Elements integration pilot in which we are participating. The Publications Router is a JISC-led project to create a system that automatically sends notifications about research articles to an institutions’ repository, together with full-text copies of those articles where available. This has the potential to both streamline open access deposit workflows and enrich metadata records in the CRIS system.
“The Scholarly Communications sector can learn a lot from open source and open processes. For example, at Coko we don’t actually own anything. It is the community that owns it. We facilitate the communities success and their success is our success. We share everything we have with them – code, methods, processes, PR, expertise, funding, successes, coffee! – and they in turn share those things with us. We are the community, the community is us. That can only happen in an environment of trust and trust is what openness – the core ingredient to best practice open source – is all about. If more people within the Scholarly Communications sector at large can learn to work like this then they will benefit from it greatly….”