Long-term Sustainability of Research Infrastructures: Science Europe’s Offer to Contribute to Ongoing Efforts

“Recommendations 24 to 27 encourage the use of RIs [research infrastructures] to enhance data production and sharing. Science Europe supports this principle: as the move towards openness continues to develop through policies such as the Open Science agenda, many RFOs [research funding organizations] and RPOs [research performing organizations] have formulated policies, requirements, and templates for research data management (RDM) and data management plans (DMPs). Science Europe advocates for international alignment of RDM policies by exploring ways to establish core RDM requirements.3 As various research communities become increasingly data-intensive or highly protocolled, this would allow for an optimal creation, curation, and re-use of data to advance technological and societal developments.”

(Re)usable Data Project

“Inspired by the efforts of scientists around the world and the game-changing efforts of projects like the Creative Commons, the Wikipedia Foundation, and the Free Software movement, we hope to engage the larger community in an open and fruitful discussion on issues concerning the use and reuse of scientific data, including the balance of openness and how to make ends meet in an increasingly competitive environment….”

Massive Open Online Course (MOOC) on Data Management for Biomedical Big Data

The Countway Library of Medicine at the Harvard Medical School has received funding from the NIH Big Data to Knowledge (BD2K) Initiative for Research Education, to develop a Massive Open Online Course (MOOC) on Data Management for Biomedical Big Data. This MOOC is is built upon and expands the training materials of the New England Collaborative Data Management Curriculum (NECDMC), developed by several libraries in the New England region. 

The Best Practices for Biomedical Research Data Management course is hosted by the Canvas Network and provides training to librarians, biomedical researchers, undergraduate and graduate biomedical students, and other individuals interested on best practices for discoverability, access, integrity, reuse value, privacy, security, and long term preservation of biomedical research data. The course is free and self-paced….”

Best Practices for Biomedical Research Data Management – Canvas Network | Free online courses | MOOCs

“Biomedical research today is not only rigorous, innovative and insightful, it also has to be organized and reproducible. With more capacity to create and store data, there is the challenge of making data discoverable, understandable, and reusable. Many funding agencies and journal publishers are requiring publication of relevant data to promote open science and reproducibility of research.

In order to meet to these requirements and evolving trends, researchers and information professionals will need the data management and curation knowledge and skills to support the access, reuse and preservation of data.

This course is designed to address present and future data management needs….”

Extracting research evidence from publications | EMBL-EBI Train online

“Extracting research evidence from publications Bioinformaticians are routinely handling big data, including DNA, RNA, and protein sequence information. It’s time to treat biomedical literature as a dataset and extract valuable facts hidden in the millions of scientific papers. This webinar demonstrates how to access text-mined literature evidence using Europe PMC Annotations API. We highlight several use cases, including linking diseases with potential treatment targets, or identifying which protein structures are cited along with a gene mutation.

This webinar took place on 5 March 2018 and is for wet-lab researchers and bioinformaticians who want to access scientific literature and data programmatically. Some prior knowledge of programmatic access and common programming languages is recommended.

The webinar covers: Available data (annotation types and sources) (1:50) API operations and parameters and web service outputs (8:08) Use case examples (16:56) How to get help (24:16)

You can download the slides from this webinar here. You can learn more about Europe PMC in our Europe PMC: Quick tour and our previous webinar Europe PMC, programmatically.

For documentation, help and support visit the Europe PMC help pages or download the developer friendly web service guide. For web service related question you can get in touch via the Google group or contact the helpdesk [at] europepmc.org”>help desk.”

Why OpenStreetMap is in Serious Trouble — Emacsen’s Blog

“…The first problem that I feel plagues OSM is that the OpenStreetMap Foundation views the mission of the project to provide the world a geographic database, but not geographic services. OSM gives people the tools to create their own map rather than offering them a simple, out of the box solution. Providing the ability for individuals and organizations to make their own map may work well for some, but it discourages small and medium size organizations from using OSM and thus engaging with the project. And even if they do use our data, their engagement is through a third party, rather than directly with us….”

COAR Next Generation Repositories: Vision and Objectives

“Vision

To position repositories as the foundation for a distributed, globally networked infrastructure for scholarly communication, on top of which layers of value added services will be deployed, thereby transforming the system, making it more research-centric, open to and supportive of innovation, while also collectively managed by the scholarly community.

Technical Vision

Our vision rests on making the resource, rather than the repository, the focus of services and infrastructure. Rather than relying on imprecise descriptive metadata to identify entities and the relationships between them, our vision relies on the idea inherent in the Web Architecture, where entities (known as “resources”) are accessible and identified unambiguously by URLs. In this architecture, it is the references which are copied between systems, rather than (as at present) the metadata records. Furthermore we encourage repository developers to automatize the metadata extraction from the actual resources as much as possible to simplify and lower the barrier to the deposit process.

Objectives

  • To achieve a level of cross-repository interoperability by exposing uniform behaviours across repositories that leverage web-friendly technologies and architectures, and by integrating with existing global scholarly infrastructures specifically those aimed at identification of e.g. contributions, research data, contributors, institutions, funders, projects.
  • To encourage the emergence of value added services that use these uniform behaviours to support discovery, access, annotation, real-time curation, sharing, quality assessment, content transfer, analytics, provenance tracing, etc.
  • To help transform the scholarly communication system by emphasizing the benefits of collective, open and distributed management, open content, uniform behaviours, real-time dissemination, and collective innovation. “

IGNTP releases Open Data

“The International Greek New Testament Project (IGNTP), established in 1948, is working towards major new editions of the Gospel according to John and the Pauline Epistles using the latest digital tools. The focus of work for these projects is at ITSEE in the University of Birmingham. In a move towards making its data openly available, the IGNTP has now released 350 of its transcriptions of Greek New Testament manuscripts under the Creative Commons Attribution licence, meaning that these files are freely available for re-use.”

Mendeley Data: Now Available via OpenAIRE – Mendeley Blog

“OpenAIRE is a network of repositories, archives and journals that support Open Access policies. OpenAIRE is a Horizon 2020 project, aimed at supporting the implementation of EC and ERC Open Access policies; open access to scientific peer reviewed publications is obligatory for all Horizon 2020 funded projects. The goal is to make as much European funded research output as possible, available to all, via the OpenAIRE portal. Every dataset published in Mendeley Data, which has an associated article or project, now becomes automatically aggregated to the OpenAIRE portal, where it can be found alongside other research. This enables researchers to discover research data from a wide range of repositories in one place. This means Mendeley Data is part of a global collaborative discourse promoting open science. With the availability of entire research projects and associated data, data reuse is supported, accelerating the pace of research.”

ardito

“ARDITO has a clear objective: Fill the gap in the digital content value network (CVN) and connect online contents to rights information, by building a complementary digital rights data network (RDN)….What do we do? We are developing tools and market-driven services to support creators and Small and Medium-Sized businesses (SMEs) in the creative content sector, to find new business ideas through monetising the re-use of their content….How do we do it? We want to implement more fully existing components of a Rights Data Network (RDN) through optimising a range of content identification technologies and integrating them into the Copyright Hub ecosystem….”