NI4OS- Europe – National Initiatives for Open Science in Europe

“National Initiatives for Open Science in Europe – NI4OS Europe, aims to be a core contributor to the European Open Science Cloud (EOSC) service portfolio, commit to EOSC governance and ensure inclusiveness on the European level for enabling global Open Science.

Lines of action

Support the development and inclusion of the national Open Science Cloud initiatives in 15 Member States and Associated Countries in the EOSC governance.
Instill within the community the EOSC philosophy and FAIR principles for data Findability, Accessibility, Interoperability and Reusability.
Provide technical and policy support for on-boarding of service providers into EOSC, including generic services (compute, data storage, data management), thematic services, repositories and data sets….”

Library Receives $1M Mellon Grant to Experiment with Digital Collections as Big Data | Library of Congress

“The Library of Congress has been awarded a $1 million grant from the Andrew W. Mellon Foundation for the Computing Cultural Heritage in the Cloud (CCHC) project, which will pilot ways to combine cutting edge technology and the collections of the largest library in the world, to support digital research at scale. …”

Library Receives $1M Mellon Grant to Experiment with Digital Collections as Big Data | Library of Congress

“The Library of Congress has been awarded a $1 million grant from the Andrew W. Mellon Foundation for the Computing Cultural Heritage in the Cloud (CCHC) project, which will pilot ways to combine cutting edge technology and the collections of the largest library in the world, to support digital research at scale. …”

STRIDES Initiative | Data Science at NIH

“The NIH Science and Technology Research Infrastructure for Discovery, Experimentation, and Sustainability (STRIDES) Initiative allows NIH to explore the use of cloud environments to streamline NIH data use by partnering with commercial providers. NIH’s STRIDES Initiative provides cost-effective access to industry-leading partners to help advance biomedical research. These partnerships enable access to rich datasets and advanced computational infrastructure, tools, and services.

The STRIDES Initiative is one of many NIH-wide efforts to implement the NIH Strategic Plan for Data Science, which provides a roadmap for modernizing the NIH-funded biomedical data science ecosystem.

By leveraging the STRIDES Initiative, NIH and NIH-funded institutions can begin to create a robust, interconnected ecosystem that breaks down silos related to generating, analyzing, and sharing research data….”

The Personal Genome Project-UK, an open access resource of human multi-omics data | Scientific Data

“Integrative analysis of multi-omics data is a powerful approach for gaining functional insights into biological and medical processes. Conducting these multifaceted analyses on human samples is often complicated by the fact that the raw sequencing output is rarely available under open access. The Personal Genome Project UK (PGP-UK) is one of few resources that recruits its participants under open consent and makes the resulting multi-omics data freely and openly available. As part of this resource, we describe the PGP-UK multi-omics reference panel consisting of ten genomic, methylomic and transcriptomic data. Specifically, we outline the data processing, quality control and validation procedures which were implemented to ensure data integrity and exclude sample mix-ups. In addition, we provide a REST API to facilitate the download of the entire PGP-UK dataset. The data are also available from two cloud-based environments, providing platforms for free integrated analysis. In conclusion, the genotype-validated PGP-UK multi-omics human reference panel described here provides a valuable new open access resource for integrated analyses in support of personal and medical genomics….”

Make code accessible with these cloud services

“Scientific software often requires installing, navigating and troubleshooting a byzantine network of computational ‘dependencies’ — the code libraries and tools on which each software module relies. Some have to be compiled from source code or configured just so, and an installation that should take a few minutes can degenerate into a frustrating online odyssey through websites such as Stack Overflow and GitHub. “One of the hardest parts of reproducibility is getting your computer set up in exactly the same way as somebody else’s computer is set up. That is just ridiculously difficult,” says Kirstie Whitaker, a neuroscientist at the Alan Turing Institute in London….”

Introducing sci.pe Endeavour

“We are excited to announce that early access to Endeavour – the new sci.pe self-hosted offering – is now available upon request.

 
 
 

Endeavour complements sci.pe cloud publishing offerings Explorer and Voyager, by providing an open source solution that enables self-hosting.

 
 
 

Endeavour allows the following uses:

 
 
 
  • For publishers: upgrade technological infrastructure while having strong guarantees on the long-term perennity and control of the of the technology used.
  • For not-for-profit, open-access journals: operate with zero platform costs on open and standard-compliant infrastructure.
  • For journal service providers: build new business opportunities, either offering hosting solutions built on sci.pe or integrating services with the platform….”