“On this page you will find indicators on how the policies of journals and funding agencies favour open access, and the percentage of publications (green and gold) actually available through open access.
The indicators cover bibliometric data on publications, as well as data on funders’ and journals’ policies. Indicators and case studies will be updated over time.”
“Springer Nature was one of the founding members of ORCID, and since 2012 we have encouraged our authors to submit verified ORCID identifiers and we display them on published papers. This ensures authors get credit for their publications, and contributes to improving the transparency of scholarly communication by disambiguating name homonyms. To further support the uptake of ORCID, in 2017 Springer Nature engaged in a trial mandating ORCID identifiers for corresponding authors of primary research manuscripts at 46 journals across our portfolios.
The trial ran from April 27 for 6 months and the mandate was applied at different stages of the manuscript processing: 14 Nature-branded research journals required iDs at acceptance, while 10 BioMed Central (BMC) and 22 Springer journals did so at initial submission. Corresponding authors were able to share their ORCID identifier in the manuscript tracking system (via the ORCID API); without this step the submission would not proceed to the next stage….”
“The Science Journals support the Transparency and Openness Promotion (TOP) guidelines to raise the quality of research published in Science and to increase transparency regarding the evidence on which conclusions are based….All data used in the analysis must be available to any researcher for purposes of reproducing or extending the analysis. Data must be available in the paper, deposited in a community special-purpose repository, accessible via a general-purpose repository such as Dryad, or otherwise openly available….”
An open letter to the new editor-in-chief of Journal of Personality and Social Psychology: Attitudes and Social Cognition, urging the adoption of best practices for data sharing, reproducibility, and open science.
“A year ago the world’s leading medical-journal editors announced plans to require their authors to share with other scientists the data associated with their published articles about clinical trials. “I realistically think this will take several years” for the right environment to be in place, said Darren B. Taichman, secretary of the International Committee of Medical Journal Editors, which proposed the now-abandoned data-sharing requirement. The benefits of an open-data system are widely accepted by scientists. Sharing the data that underlie a journal article helps colleagues confirm the accuracy of the published finding, speed and expand their own research, and credit the originators, advocates have said. But the coalition of journal editors, also known as the ICMJE, said last week that a rash of complaints from scientists about the proposed requirement had led it to conclude that the research community still was not ready for the mandate….”
Open data is a vital pillar of open science and a key enabler for reproducibility, data reuse, and novel discoveries. Enforcement of open-data policies, however, largely relies on manual efforts, which invariably lag behind the increasingly automated generation of biological data. To address this problem, we developed a general approach to automatically identify datasets overdue for public release by applying text mining to identify dataset references in published articles and parse query results from repositories to determine if the datasets remain private. We demonstrate the effectiveness of this approach on 2 popular National Center for Biotechnology Information (NCBI) repositories: Gene Expression Omnibus (GEO) and Sequence Read Archive (SRA). Our Wide-Open system identified a large number of overdue datasets, which spurred administrators to respond directly by releasing 400 datasets in one week.
“Advances in genetic sequencing and other technologies have led to an explosion of biological data, and decades of openness (both spontaneous and enforced) mean that scientists routinely deposit data in online repositories. But researchers are only human and may forget to tell a repository to release the data when a paper is published.
A new tool, developed by University of Washington and Microsoft researchers Maxim Grechkin, Hoifung Poon and Bill Howe, and described in a Community Page article publishing June 8 in the open access journal PLOS Biology, hopes to get around this problem and help advance open science by automatically detecting datasets that are overdue for publication…..”
“Psychological Science is now introducing some minor changes designed to increase the frequency and ease with which editors and reviewers of submissions can access data and materials as part of the peer-review process. I anticipate that, in addition to enhancing the review process, these changes will further increase the percentage of Psychological Science articles for which researchers can quickly and easily access data and materials postpublication. The changes we are introducing are tweaks and nudges, not radical shifts. In the following, I explain the changes and why they are worth undertaking.”
“Published in Science in 2015, the TOP [Transparency and Openness Promotion] guidelines include eight modular standards, each with three levels of increasing stringency. Journals select which of the eight transparency standards they wish to adopt for their journal, and select a level of implementation for each standard. These features provide flexibility for adoption depending on disciplinary variation, but simultaneously establish community standards….”
“Data Descriptors, Scientific Data‘s primary article type, describe scientifically valuable datasets. These datasets must be made available to editors and referees at the time of submission, and must be shared with the scientific community as a condition of publication. Here, we provide information on the types of data that should be archived, guidance for authors on selecting a suitable repository for their data, and how to archive sensitive data.
Scientific Data’s data policies are compatible with the standardised research data policies set out by Springer Nature.
Please read on for our data deposition policies, and please contact us if you would like additional advice on how best to meet these requirements for your own data….”