Blog – Europe PMC: Announcing the new version of SciLite – the Europe PMC tool for highlighting annotations

“This month, Europe PMC released a new version of SciLite, a powerful tool for highlighting annotations in life sciences publications. SciLite is powered by the Europe PMC annotation platform via the open annotation API, which provides access to over 1.3 billion annotations. Highlighting annotations in the text enables users to easily scan the article and locate key biological entities, such as genes/proteins, accession numbers, protein interactions, diseases, gene-disease relationship and more….”

Europe PMC: unlocking the potential of COVID-19 preprints | European Bioinformatics Institute

“Summary

Europe PMC is now indexing full-text preprints related to the COVID-19 pandemic and the SARS-CoV-2 virus, as well as the underlying data
The project will make COVID-19 scientific literature available as fast as possible in a single repository, in a format that allows text mining
Researchers and healthcare professionals will be able to access and reuse preprints more easily, accelerating research into better treatments or a vaccine….”

Blog – Europe PMC: The new Europe PMC is here

“It’s time to embrace change. Today Europe PMC proudly unveils a new website, packed with useful features. The improved Europe PMC offers a better search and reading experience, as well as better access to data….”

Announcing new Europe PMC Beta!

“We are always listening to what our users have to say. And this week we are happy to present you a Beta version of Europe PMC with lots of improvements based on extensive user feedback. 

Europe PMC Beta will be available alongside the current Europe PMC website throughout October and November. You can access it at any time using the Beta link in the header of the current site….

All design changes on Europe PMC Beta are based on user research findings and feedback. In 2017 we asked 12 researchers to complete a diary documenting their literature searches over one week, to better understand how and why they carried out literature searches in the context of their day-to-day work. We also carried out several rounds of usability testing, to evaluate how well Europe PMC works for the people who use it. If you are curious to see it, the results of our user research are published on Figshare.

We would love to hear your thoughts on Europe PMC Beta! Please use the Feedback button to leave your feedback, or email helpdesk@europepmc.org. If you would like to take part in future Europe PMC usability testing, to help us continue to improve the website, please contact helpdesk@europepmc.org….”

Extracting research evidence from publications | EMBL-EBI Train online

“Extracting research evidence from publications Bioinformaticians are routinely handling big data, including DNA, RNA, and protein sequence information. It’s time to treat biomedical literature as a dataset and extract valuable facts hidden in the millions of scientific papers. This webinar demonstrates how to access text-mined literature evidence using Europe PMC Annotations API. We highlight several use cases, including linking diseases with potential treatment targets, or identifying which protein structures are cited along with a gene mutation.

This webinar took place on 5 March 2018 and is for wet-lab researchers and bioinformaticians who want to access scientific literature and data programmatically. Some prior knowledge of programmatic access and common programming languages is recommended.

The webinar covers: Available data (annotation types and sources) (1:50) API operations and parameters and web service outputs (8:08) Use case examples (16:56) How to get help (24:16)

You can download the slides from this webinar here. You can learn more about Europe PMC in our Europe PMC: Quick tour and our previous webinar Europe PMC, programmatically.

For documentation, help and support visit the Europe PMC help pages or download the developer friendly web service guide. For web service related question you can get in touch via the Google group or contact the helpdesk [at] europepmc.org”>help desk.”