SemEHR: A general-purpose semantic search system to surface semantic data from clinical notes for tailored care, trial recruitment, and clinical research* | Journal of the American Medical Informatics Association | Oxford Academic

“Unlocking the data contained within both structured and unstructured components of electronic health records (EHRs) has the potential to provide a step change in data available for secondary research use, generation of actionable medical insights, hospital management, and trial recruitment. To achieve this, we implemented SemEHR, an open source semantic search and analytics tool for EHRs….”

5 Tips for Keeping Your Finger on the Open Access Pulse – Copyright Clearance Center

“The pace of change in open access shows no sign of slackening in 2018. Here, Rob Johnson shares his advice on keeping up to date with the latest developments….Peter Suber’s OA tracking project (@oatp) provides crowd-sourced alerts about dozens of open access developments across the world every day….”

APA releases new journal article reporting standards

“Brian Nosek, PhD, co-founder and director of the Center for Open Science, welcomed the new standards. “Achieving the ideals of transparency in science requires knowing what one needs to be transparent about,” he said. “These updated standards will improve readers’ understanding of what happened in the research. This will improve both the accuracy of interpretation of the existing evidence, and the ability to replicate and extend the findings to improve understanding.” APA has partnered with the Center for Open Science to advance open science practices in psychological research through open science badges on articles, a data repository for APA published articles and designating the COS’ PsyArXiv as the preferred preprint server for APA titles….”

Tear Down That Paywall: The Movement to Make Ocean Research Free — Oceans Deeply

“As scientists race to save coral reefs and tackle other crucial marine issues, access to expensive scientific journals has become a roadblock to sharing knowledge, especially for researchers in developing countries….

…Open Communications for The Ocean (OCTO), a Woodinville, Washington-based nonprofit that recently launched a marine science research “repository” called MarXiv. Its goal is to systematically make more marine research freely accessible….”

Perspectives on #OpenAccess During #OpenLearning17 hangout | Reflecting Allowed

“We just ended the first of two #OpenLearning17 hangouts, with Frances Bell, Chris Gilliard, Chris Friend and surprise guest, Peter Suber, whose book on Open Access we’ve been reading this week. The hangout was co-facilitated by Sue Erickson and myself, and I also invited folks from the community to participate, so Amy Nelson and Jim Luke joined us and enriched the discussion further. When putting together the guest list for this, I thought of reaching out to people with diverse approaches to openness, and I think while we all have a similar orientation towards openness and social justice, we definitely took different approaches to it in the hangout. From Chris Friend talking about openness in the Hybrid Pedagogy review process, to Frances Bell providing her perspective on open access over time, and offering critical questions (what Frances has to offer is so multi-faceted it’s difficult to summarize, honestly), and Chris Gilliard talking about digital redlining – and Peter Suber answering questions on different topics, but particularly giving his views on Gold Open Access that involves Article Processing Charges. …”

Interview: ‘Everyone, Whether a Historian or a Geologist, Should Learn Mathematics’

“SR [Sandhya Ramesh]: What do you think about open science and open data?

SB [Sanghamitra Bandyopadhyay]: That’s where the world is heading. All research done with taxpayer funds are open, and this is essentially how biology works already. A lot of biological data is available online free of cost, which helps researchers from countries like ours who cannot buy data. Same with software, too. The open source movement is prevalent, important and will continue. Healthcare especially can’t grow unless it’s global and open. But I’m curious to see how businesses will work around this….”

South Korean universities reach agreement with Elsevier after long standoff | Science | AAAS

“After a monthslong standoff, a consortium of hundreds of South Korean universities has reached a new deal with scientific publisher Elsevier for access to ScienceDirect, a database containing content from 3500 academic journals and thousands of electronic books. The agreement, which includes price hikes between 3.5% and 3.9%, was concluded shortly before 12 January, the day Elsevier had threatened to cut access to ScienceDirect. The publisher had pushed for a 4.5% increase….”

A corporation strives to democratize access to research funding data

“New product from Digital Science, a major corporate player, will make information about scholarly research life cycle available free to individual scientists.

Recent months have brought much agitation among academic researchers over the role of for-profit companies in the scholarly workflow. There is growing mistrust of how scholarly networking sites Academia.edu and ResearchGate are handling researchers’ data. And major companies such as Elsevier have expanded their footprint into all stages of the research process, raising questions over whether it is wise for researchers and institutions to become reliant on one company’s services amid fears of future fee hikes….”

Scripps Translational Science Institute, Nature Research launch open-access digital medicine journal

“The emerging field of digital medicine has the potential to transform healthcare on a global scale. Pioneering studies are being conducted to generate the clinical evidence necessary to drive widespread adoption of digital health solutions, both within a clinical setting and by consumers.

To support the dissemination of these studies, researchers from the Scripps Translational Science Institute (STSI) at The Scripps Research Institute (TSRI) have launched an open-access, peer-reviewed online journal—npj Digital Medicine. The new publication is a collaboration between STSI and Nature Research, a portfolio of high-quality journals and services and part of Springer Nature, a leading global research, educational and professional publisher….”